CLC Protein Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.
CLC Protein Workbench includes the following features:
Protein Sequence Analysis
* Integrated 3D molecule view
* Transmembrane helix prediction
* Antigenicity
* Secondary protein structure prediction
* PFAM domain search
* Web-based prediction of Signal peptides and their cleavage sites (SignalP located on http://www.cbs.dtu.dk/services/SignalP/)
* Hydrophobicity analyses and graphs
* Protein charge analysis and graphs
* Reverse translation from protein to gene (a number of translation Tables)
* Interactive translations of DNA and RNA to protein (both single sequences and alignments)
* Proteolytic cleavage detection
* Report of protein statistics (one or more proteins in each report)
* Comprehensive report including a range of protein analyses in one document
Database searches
* Web based sequence search using BLAST
* BLAST on local databases
* Build local BLAST databases
* GenBank Entrez searches
* UniProt searches (SwissProt/TrEMBL)
* PubMed lookup
* Web based lookup in UniProt, NCBI, and Google
Pattern search
* Search for sequence matches
* Motif search for basic patterns
* Motif search using regular expressions
* Motif search with ProSite patterns
* Pattern discovery (unknown patterns)
Project and data management
* Full integration of data input, data management, calculation results, and data export
* Detailed History log
* All types of files can be saved in local projects, and launched from the program
* Import and export of data in a large number of file formats
* Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
